#ifndef _CSRMatrix_hpp_ #define _CSRMatrix_hpp_ //@HEADER // ************************************************************************ // // MiniFE: Simple Finite Element Assembly and Solve // Copyright (2006-2013) Sandia Corporation // // Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive // license for use of this work by or on behalf of the U.S. Government. // // This library is free software; you can redistribute it and/or modify // it under the terms of the GNU Lesser General Public License as // published by the Free Software Foundation; either version 2.1 of the // License, or (at your option) any later version. // // This library is distributed in the hope that it will be useful, but // WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 // USA // // ************************************************************************ //@HEADER #include #include #include #ifdef HAVE_MPI #include #endif namespace miniFE { template struct CSRMatrix { CSRMatrix() : has_local_indices(false), rows(), row_offsets(), row_offsets_external(), packed_cols(), packed_coefs(), num_cols(0) #ifdef HAVE_MPI ,external_index(), external_local_index(), elements_to_send(), neighbors(), recv_length(), send_length(), send_buffer(), request() #endif { } ~CSRMatrix() {} typedef Scalar ScalarType; typedef LocalOrdinal LocalOrdinalType; typedef GlobalOrdinal GlobalOrdinalType; bool has_local_indices; std::vector rows; std::vector row_offsets; std::vector row_offsets_external; std::vector packed_cols; std::vector packed_coefs; LocalOrdinal num_cols; #ifdef HAVE_MPI std::vector external_index; std::vector external_local_index; std::vector elements_to_send; std::vector neighbors; std::vector recv_length; std::vector send_length; std::vector send_buffer; std::vector request; #endif size_t num_nonzeros() const { return row_offsets[row_offsets.size()-1]; } void reserve_space(unsigned nrows, unsigned ncols_per_row) { rows.resize(nrows); row_offsets.resize(nrows+1); packed_cols.reserve(nrows * ncols_per_row); packed_coefs.reserve(nrows * ncols_per_row); } void get_row_pointers(GlobalOrdinalType row, size_t& row_length, GlobalOrdinalType*& cols, ScalarType*& coefs) { ptrdiff_t local_row = -1; //first see if we can get the local-row index using fast direct lookup: if (rows.size() >= 1) { ptrdiff_t idx = row - rows[0]; if (idx < rows.size() && rows[idx] == row) { local_row = idx; } } //if we didn't get the local-row index using direct lookup, try a //more expensive binary-search: if (local_row == -1) { typename std::vector::iterator row_iter = std::lower_bound(rows.begin(), rows.end(), row); //if we still haven't found row, it's not local so jump out: if (row_iter == rows.end() || *row_iter != row) { row_length = 0; return; } local_row = row_iter - rows.begin(); } LocalOrdinalType offset = row_offsets[local_row]; row_length = row_offsets[local_row+1] - offset; cols = &packed_cols[offset]; coefs = &packed_coefs[offset]; } }; }//namespace miniFE #endif